Nucleotide sequence of the carlavirus associated with blueberry scorch and similar diseases.
Identifieur interne : 004B28 ( Main/Exploration ); précédent : 004B27; suivant : 004B29Nucleotide sequence of the carlavirus associated with blueberry scorch and similar diseases.
Auteurs : T D Cavileer [États-Unis] ; B T Halpern ; D M Lawrence ; E V Podleckis ; R R Martin ; B I HillmanSource :
- The Journal of general virology [ 0022-1317 ] ; 1994.
Descripteurs français
- KwdFr :
- Alignement de séquences (MeSH), Banque génomique (MeSH), Capside (génétique), Carlavirus (classification), Carlavirus (génétique), Données de séquences moléculaires (MeSH), Fruit (microbiologie), Gènes viraux (génétique), Génome viral (MeSH), Maladies des plantes (microbiologie), Protéines virales structurales (génétique), Séquence d'acides aminés (MeSH), Séquence nucléotidique (MeSH).
- MESH :
English descriptors
- KwdEn :
- Amino Acid Sequence (MeSH), Base Sequence (MeSH), Capsid (genetics), Carlavirus (classification), Carlavirus (genetics), Fruit (microbiology), Genes, Viral (genetics), Genome, Viral (MeSH), Genomic Library (MeSH), Molecular Sequence Data (MeSH), Plant Diseases (microbiology), Sequence Alignment (MeSH), Viral Structural Proteins (genetics).
- MESH :
- chemical , genetics : Viral Structural Proteins.
- classification : Carlavirus.
- genetics : Capsid, Carlavirus, Genes, Viral.
- microbiology : Fruit, Plant Diseases.
- Amino Acid Sequence, Base Sequence, Genome, Viral, Genomic Library, Molecular Sequence Data, Sequence Alignment.
Abstract
We have synthesized and mapped a library of cDNA clones representing the RNA genome of a strain of blueberry scorch carlavirus (BBScV) associated with a disease known locally, in New Jersey, U.S.A., as Sheep Pen Hill disease. The nucleotide sequence of that strain was determined to be 8514 residues, excluding the poly(A) tail. In addition, cDNA clones representing the 3' terminus of another strain of the virus from the same field were synthesized, mapped and sequenced. The overall identity between sequences of these two strains was approximately 90% spanning the 1634 residue overlap, confirming their identity as distinct strains and not simply different isolates of a single strain. Finally, the coat protein gene of a distinct strain of the virus, isolated from plants with blueberry scorch disease in the Puyallup Valley in Washington State, U.S.A., was cloned from total cDNA by PCR. Sequence analysis revealed that the strain from Washington was more divergent from the two New Jersey strains than they were from each other. Comparisons of these sequences with other carlavirus sequences indicated that BBScV is more closely related to lily symptomless virus and potato virus S than to potato virus M, Helenium virus S, carnation latent virus or poplar mosaic virus. BBScV and potato virus M shared approximately 54% nucleotide sequence identity overall.
DOI: 10.1099/0022-1317-75-4-711
PubMed: 8151289
Affiliations:
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uniqKey="Podleckis E" first="E V" last="Podleckis">E V Podleckis</name></author><author><name sortKey="Martin, R R" sort="Martin, R R" uniqKey="Martin R" first="R R" last="Martin">R R Martin</name></author><author><name sortKey="Hillman, B I" sort="Hillman, B I" uniqKey="Hillman B" first="B I" last="Hillman">B I Hillman</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="1994">1994</date><idno type="RBID">pubmed:8151289</idno><idno type="pmid">8151289</idno><idno type="doi">10.1099/0022-1317-75-4-711</idno><idno type="wicri:Area/Main/Corpus">004B44</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">004B44</idno><idno type="wicri:Area/Main/Curation">004B44</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">004B44</idno><idno type="wicri:Area/Main/Exploration">004B44</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Nucleotide sequence of the carlavirus associated with blueberry scorch and similar diseases.</title><author><name sortKey="Cavileer, T D" sort="Cavileer, T D" uniqKey="Cavileer T" first="T D" last="Cavileer">T D Cavileer</name><affiliation wicri:level="2"><nlm:affiliation>Department of Plant Pathology, Rutgers University, New Brunswick, New Jersey 08903.</nlm:affiliation><country xml:lang="fr">États-Unis</country><placeName><region type="state">New Jersey</region></placeName><wicri:cityArea>Department of Plant Pathology, Rutgers University, New Brunswick</wicri:cityArea></affiliation></author><author><name sortKey="Halpern, B T" sort="Halpern, B T" uniqKey="Halpern B" first="B T" last="Halpern">B T Halpern</name></author><author><name sortKey="Lawrence, D M" sort="Lawrence, D M" uniqKey="Lawrence D" first="D M" last="Lawrence">D M Lawrence</name></author><author><name sortKey="Podleckis, E V" sort="Podleckis, E V" uniqKey="Podleckis E" first="E V" last="Podleckis">E V Podleckis</name></author><author><name sortKey="Martin, R R" sort="Martin, R R" uniqKey="Martin R" first="R R" last="Martin">R R Martin</name></author><author><name sortKey="Hillman, B I" sort="Hillman, B I" uniqKey="Hillman B" first="B I" last="Hillman">B I Hillman</name></author></analytic><series><title level="j">The Journal of general virology</title><idno type="ISSN">0022-1317</idno><imprint><date when="1994" type="published">1994</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence (MeSH)</term><term>Base Sequence (MeSH)</term><term>Capsid (genetics)</term><term>Carlavirus (classification)</term><term>Carlavirus (genetics)</term><term>Fruit (microbiology)</term><term>Genes, Viral (genetics)</term><term>Genome, Viral (MeSH)</term><term>Genomic Library (MeSH)</term><term>Molecular Sequence Data (MeSH)</term><term>Plant Diseases (microbiology)</term><term>Sequence Alignment (MeSH)</term><term>Viral Structural Proteins (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Alignement de séquences (MeSH)</term><term>Banque génomique (MeSH)</term><term>Capside (génétique)</term><term>Carlavirus (classification)</term><term>Carlavirus (génétique)</term><term>Données de séquences moléculaires (MeSH)</term><term>Fruit (microbiologie)</term><term>Gènes viraux (génétique)</term><term>Génome viral (MeSH)</term><term>Maladies des plantes (microbiologie)</term><term>Protéines virales structurales (génétique)</term><term>Séquence d'acides aminés (MeSH)</term><term>Séquence nucléotidique (MeSH)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Viral Structural Proteins</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Carlavirus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Capsid</term><term>Carlavirus</term><term>Genes, Viral</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Capside</term><term>Carlavirus</term><term>Gènes viraux</term><term>Protéines virales structurales</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Fruit</term><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Fruit</term><term>Plant Diseases</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term><term>Base Sequence</term><term>Genome, Viral</term><term>Genomic Library</term><term>Molecular Sequence Data</term><term>Sequence Alignment</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Alignement de séquences</term><term>Banque génomique</term><term>Données de séquences moléculaires</term><term>Génome viral</term><term>Séquence d'acides aminés</term><term>Séquence nucléotidique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">We have synthesized and mapped a library of cDNA clones representing the RNA genome of a strain of blueberry scorch carlavirus (BBScV) associated with a disease known locally, in New Jersey, U.S.A., as Sheep Pen Hill disease. The nucleotide sequence of that strain was determined to be 8514 residues, excluding the poly(A) tail. In addition, cDNA clones representing the 3' terminus of another strain of the virus from the same field were synthesized, mapped and sequenced. The overall identity between sequences of these two strains was approximately 90% spanning the 1634 residue overlap, confirming their identity as distinct strains and not simply different isolates of a single strain. Finally, the coat protein gene of a distinct strain of the virus, isolated from plants with blueberry scorch disease in the Puyallup Valley in Washington State, U.S.A., was cloned from total cDNA by PCR. Sequence analysis revealed that the strain from Washington was more divergent from the two New Jersey strains than they were from each other. Comparisons of these sequences with other carlavirus sequences indicated that BBScV is more closely related to lily symptomless virus and potato virus S than to potato virus M, Helenium virus S, carnation latent virus or poplar mosaic virus. BBScV and potato virus M shared approximately 54% nucleotide sequence identity overall.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">8151289</PMID><DateCompleted><Year>1994</Year><Month>05</Month><Day>09</Day></DateCompleted><DateRevised><Year>2006</Year><Month>11</Month><Day>15</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0022-1317</ISSN><JournalIssue CitedMedium="Print"><Volume>75 ( Pt 4)</Volume><PubDate><Year>1994</Year><Month>Apr</Month></PubDate></JournalIssue><Title>The Journal of general virology</Title><ISOAbbreviation>J Gen Virol</ISOAbbreviation></Journal><ArticleTitle>Nucleotide sequence of the carlavirus associated with blueberry scorch and similar diseases.</ArticleTitle><Pagination><MedlinePgn>711-20</MedlinePgn></Pagination><Abstract><AbstractText>We have synthesized and mapped a library of cDNA clones representing the RNA genome of a strain of blueberry scorch carlavirus (BBScV) associated with a disease known locally, in New Jersey, U.S.A., as Sheep Pen Hill disease. The nucleotide sequence of that strain was determined to be 8514 residues, excluding the poly(A) tail. In addition, cDNA clones representing the 3' terminus of another strain of the virus from the same field were synthesized, mapped and sequenced. The overall identity between sequences of these two strains was approximately 90% spanning the 1634 residue overlap, confirming their identity as distinct strains and not simply different isolates of a single strain. Finally, the coat protein gene of a distinct strain of the virus, isolated from plants with blueberry scorch disease in the Puyallup Valley in Washington State, U.S.A., was cloned from total cDNA by PCR. Sequence analysis revealed that the strain from Washington was more divergent from the two New Jersey strains than they were from each other. Comparisons of these sequences with other carlavirus sequences indicated that BBScV is more closely related to lily symptomless virus and potato virus S than to potato virus M, Helenium virus S, carnation latent virus or poplar mosaic virus. 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MajorTopicYN="N">Base Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002213" MajorTopicYN="N">Capsid</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017788" MajorTopicYN="N">Carlavirus</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005638" MajorTopicYN="N">Fruit</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005814" MajorTopicYN="N">Genes, Viral</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016679" MajorTopicYN="Y">Genome, Viral</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015698" MajorTopicYN="N">Genomic 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PubStatus="entrez"><Year>1994</Year><Month>4</Month><Day>1</Day><Hour>0</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">8151289</ArticleId><ArticleId IdType="doi">10.1099/0022-1317-75-4-711</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>New Jersey</li></region></list><tree><noCountry><name sortKey="Halpern, B T" sort="Halpern, B T" uniqKey="Halpern B" first="B T" last="Halpern">B T Halpern</name><name sortKey="Hillman, B I" sort="Hillman, B I" uniqKey="Hillman B" first="B I" last="Hillman">B I Hillman</name><name sortKey="Lawrence, D M" sort="Lawrence, D M" uniqKey="Lawrence D" first="D M" last="Lawrence">D M Lawrence</name><name sortKey="Martin, R R" sort="Martin, R R" uniqKey="Martin R" first="R R" last="Martin">R R Martin</name><name sortKey="Podleckis, E V" sort="Podleckis, E V" uniqKey="Podleckis E" first="E V" last="Podleckis">E V Podleckis</name></noCountry><country name="États-Unis"><region name="New Jersey"><name sortKey="Cavileer, T D" sort="Cavileer, T D" uniqKey="Cavileer T" first="T D" last="Cavileer">T D Cavileer</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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